Due to scheduled maintenance work, Ensembl tools will be temporarily unavailable on Tuesday 6th February 2024 between 11:30 and 13:00 (GMT).
Continue readingTag: biomart
Free Ensembl Browser and REST API virtual workshops in October
Sign up for our virtual series covering the Ensembl genome browser and accessing Ensembl data via its REST API. Both workshops will be held from Tuesday to Thursday, with the browser course running from 10th to 12th October and the REST API course from 17th to 19th July (09:00 – 12:00 BST). Read on for more information and how to register.
Continue readingFree Ensembl Browser and REST API virtual workshops in July
Sign up for our virtual series covering the Ensembl genome browser and accessing Ensembl data via its REST API. Both workshops will be held from Tuesday to Thursday, with the browser course running from 11th to 13th July and the REST API course from 18th to 20th July (14:00 – 17:00 BST). Read on for more information and how to register.
Continue readingRetirement of Ensembl US West AWS mirror
The Ensembl mirror for US West will be retired at the end of January 2023, at the time of Ensembl release 109.
Continue readingFree Ensembl Browser and REST API virtual workshops in November
Virtual series covering the genome browser and the REST API. Both workshops will be held between Tuesday – Thursday, with the Browser on 15th – 17th November and the REST API on 22nd – 24th November 2022 (9am-12pm GMT). Read on for more information and registration instructions.
Continue readingRemoving Regulatory Evidence from BioMart
Human and Mouse Regulatory Evidence datasets will be retired from the Regulation BioMart in Ensembl 107.
Continue readingFree Ensembl Browser and REST API virtual workshops in March
Sign up for our recurring virtual series covering the genome browser and the REST API. Both workshops will be held between Tuesday – Thursday, with the Browser on 8th-10th March and the REST API on 15th-17th March 2022 (2pm-5pm GMT). Read on for more information and registration instructions.
Continue readingUpdate: Temporary disruption to Ensembl Tools and Archive services is now resolved
Disruptions are now resolved and Ensembl services are back to normal.
We have temporarily disabled Ensembl Tools, for example VEP and BLAST/BLAT on our vertebrate live websites (www, US East, US West, Asia and GRCh37) whilst we investigate a problem with the underlying infrastructure in our Harlow data center. Some of our archive resources are also currently unavailable. We are sorry for the trouble this may cause and we hope to restore them as soon as we can. Other resources such as our FTP site and public MySQL servers are unaffected.
Important changes of data availability in Ensembl gene trees and BioMart
In Ensembl 103, and subsequent releases, we will be limiting the number of species represented in our gene trees and the BioMart data export tool. These changes are required to most effectively support our rapid growth in the number of available species.
Continue readingCool stuff Ensembl VEP can do: one click BioMart
The web VEP tool gives you a lot of useful information about your variants, but you may want more details, for example about the genes your variants overlap: maybe you want to fetch their sequences, homologues or protein domains. With a single click, you can go straight to BioMart, using your list of genes or known variants as your filter.
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