We are pleased to announce the release of Ensembl 113, and the corresponding release of Ensembl Genomes 60. This release brings major gene and regulatory feature annotation updates in Homo sapiens (Human) and Mus musculus (Mouse). We have updated existing genomes and added additional genomes across the different Ensembl sites, including livestock breeds in Ensembl, three new species in Ensembl Plants and 26 new species in Ensembl Metazoa. Can’t find the species you are looking for? Don’t forget that new and exciting genome assemblies and annotations are continuously added to Ensembl Rapid Release!

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The Ensembl VEP command-line tool can annotate and filter variants called against the latest human assemblies, including the telomere-to-telomere assembly of the CHM13 cell line (T2T-CHM13). In this blog post, we provide examples of how to run Ensembl VEP with these new assemblies and list the additional annotations supported via plugins.

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In July, we talked to Reham Fatima, a member of the Havana team. The Havana team carry out manual annotation on human, mouse, zebrafish and rat genomes. Reham has contributed to the MANE and GENCODE projects. Read more about Reham’s work at EMBL-EBI and what kind of cuisine she likes the most. You can also see some amazing photographs she has taken in her free time.

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